In order to strengthen the cooperative control of multi-agent systems, a research has been conducted on the intermittent bipartite consistency flaw of discrete-time multi-agent systems. Firstly, combined with intermittent control, a control protocol which can achieve bipartite consensus has been proposed, thus obtaining the condition of bipartite consistency. And then, the convergence analysis of the system is given with the algebraic graph theory and Lyapunov stability theory adopted. Finally, the numerical simulation results show that the proposed intermittent control protocol is effective for the stability of discrete time multi-agent systems.